Subcutaneous Transmitter Surgical Protocol

©2025, Alice Hashemi Open Source Instruments Inc.
©2025, Kevan Hashemi Open Source Instruments Inc.
page-chunk match-prompts-only Show me how to implant a Subcutaneous Transmitter (SCT) in a rodent. How do I implant and secure the EMG electrodes provided by an SCT? How do I attach the EEG electrodes of an SCT to the skull of a rodent? How do I record Electrocorticogram (ECoG) and Local Field Potential (LFP) with an SCT?

Contents

Notices
Introduction
Materials
Related Protocols
Device Preparation
Preparation and Anesthesia
Scalp Incision
Single-Incision Method
Two-Incision Method
Burr Hole Drilling
EEG Implantation
EMG Implantation
Cementing and Closing
Post-Surgical Care
Notes and Best Practices

Notices

Acknowledgement: This protocol is a combination of the protocols provide to us by Luiz Almeida Silva, UCL, and Robert Wykes, UCL. The method for securing EMG electrodes to muscle tissue was described to us by Joel Raymond, PhD, Postdoctoral Research Fellow, Rutgers University.

Disclaimer: Surgical and animal welfare requirements vary across institutions. Consult your institution's veterinary staff to ensure compliance with local guidelines.

Disclaimer: The method we describe for securing EMG electrodes has not yet been validated by our customers.

Introduction

[29-OCT-25] This protocol describes how to implant a Subcutaneous Transmitter (SCT) in rat or a mouse so as to record EEG from the brain and EMG from the muscles in the neck. By "EEG" we really mean electrocorticogram (ECoG) and local field potential (LFP), which is what our brain surface and brain depth electrodes detect respectively. In this protocol we use as an example for implantation an A3049JS, which is a thin-profile, EEG and EMG combined transmitter from our A3049 family of SCTs. But we intend for this protocol to act as a basis for devising your own surgery protocol for your own SCT versions. If you are working with a four-channel rat transmitter, you may have eight leads to implant: two for electroencephalogram (EEG), two for electromyogram (EMG), two for electrocardiogram (ECG), and two for electrogastrogram (EGG). The ECG electrodes must be secured to the thoracic cavity in the same way that this protocol shows EMG electrodes being secured to muscles in the neck. The EGG electrodes must be secured to the stomach with the same procedure: tunneling with a needle, sliding the P-Coil through the tunnel, suturing, and capping.

We can equip our SCTs with two types of leads for EEG and EMG recording. Our "C-Lead" is 0.5 mm in diameter with a 0.25-mm diameter spring inside. Our "B-Lead" is 0.7 mm in diameter, with a 0.45-mm diameter spring inside. The C-Leads are much more flexible, but they can be terminated only with A-Coils or P-Coils. The wire in the C-Lead is too fragile for a pin or crimp contact. If you want to deploy depth electrodes on the skull, your EEG leads must be B-Leads. The B-Leads are tougher, so we recommend you ask for B-Leads if you are implanting in rats.

There are two primary methods for implanting SCTs. In the "Single-Incision Method", we make a single incision in the scalp and use forceps to make a pocket in the neck for the SCT body. The single-incision method is suitable only for slim-profile transmitters implanted in mice. We use the "Two-Incision Method" in all other cases. In the two-incision method, we make one incision in the scalp and another in the back. We implant the SCT over the back and tunnel its leads under the skin to the head. The two-incision method is suitable for thick-profile transmitters in mice and for all implantations in rats.

Materials

Device Preparation

  1. Confirm you can turn the SCT on and off with magnet.
  2. Confirm that the SCT can detect AC noise by viewing its signal on your computer.
  3. Confirm that the leads of your SCT are the correct length for the size of your animal, your target recording sites, and your target implantation site.
  4. Ensure the two yellow and green EMG leads have 3 mm of exposed wire coil at the end.
  5. If you need to expose more wire, follow the instructions in Insulation Removal.
  6. Confirm that the EMG coils will fit into your syringe needle.
  7. Prepare ECoG surface electrode leads. These have 1 mm of bare steel coil at the end. Hold the lead insulation near the tip with one pair of tweezers. Grab the end of the bare coil with another pair of tweezers. Stretch the coil until it is mostly straight. Make a right-angle bend in the wire 1 mm from the insulation. Trim the end of the lead so its length equals the skull thickness plus your desired cortical depth.
  8. If you have depth eletrodes to attach to your EEG leads, and you will be implanting using a single incision in the scalp, you may attach the depth electrodes now. Otherwise, do not attach them yet.
  9. Sterilize the SCT and any depth electrodes in ethanol at least five minutes, but no longer than an hour.

Preparation and Anesthesia

Transmitter weight dictates the minimum allowable animal weight. The A3049J2S is a 0.2-80Hz, two-channel transmitter intended for sleep studies. Its mass is 2.6 g. The animals must have mass at least 20 g at the time of implantation in order for us to be confident that the implant will be tolerated.

  1. Weigh the animal and record its weight.
  2. Anesthetize the animal according to your institutional guidelines.
  3. Perform toe-pinch to ensure proper anesthesia depth.
  4. Administer pain medications according to your institutional guidelines.
  5. Shave and disinfect the scalp area.
  6. If implanting in the back, shave and disinfect the back area.
  7. Place the animal on a heating pad or temperature-controlled surgical platform.
  8. Place the animal in a stereotaxic stand, connect to anesthetic, and apply eye lubricant.
  9. Disinfect the surgical sites.

Scalp Incision

  1. Using forceps and scissors, lift the scalp and remove an oval section of skin to expose the top of the skull. Avoid the eyes.
  2. If you are implanting for EMG recording, extend the existing incision a few millimeters beyond the skull to expose both trapezius muscles on the neck. You will be implanting one electrode in each muscle.
  3. Clean the skull surface of connective tissue using a bone scraper.
  4. Apply hydrogen peroxide to the skull and immediately dry with cotton swab.
  5. Remove any remaining connective tissue on the skull with bone scraper.

Single-Incision Method

The single-incision method for implanting the SCT body involves inserting the body of the device through the scalp incision and tunneling it down the neck to the back. This method is suitable only for our A3048 SCTs and the slim-profile versions of our A3049 SCTs. These transmitters have side-mounting batteries that give them their slim profile. Because you are inserting the transmitter into a pocket from the skull incision, you can attach any depth electrodes to their leads before you insert the transmitter.

  1. Lift the skin at the back of the scalp incision.
  2. Use forceps to create a tunnel under the skin from the scalp incision to where the transmitter will lay.
  3. To create the tunnel, clear away connective tissue that connects the muscle and the skin. The tunnel should be about as wide as the transmitter you are goint to insert into it.
  4. The tunnel should extend about about half way around the back, into the mid-dorsal region.
  5. Insert the transmitter into the tunnel, guiding it down the spine.
  6. Ensure the transmitter stays centered over the spine to avoid displacement.

Two-Incision Method

The two-incision method of implanting the SCT body involves a second incision in the back, where you we make a pocket to hold the body of the device. You will tunnel the leads under the animal's skin from this pocket to the incision on the scalp. If you are deploying a depth electrode for the red lead on the skull, you will attach it to the end of the red leads after you pull all the leads to the skull incision.

  1. Use tweezers to pinch and cut skin of mid-dorsal region, half way down the back. Incision must be large enough for the transmitter to fit into.
  2. Make a pocket for the transmitter to sit in. Clear connective tissue between skin and muscle where transmitter should lay.
  3. There are different schools of thought on where the transmitter should lay. We want to avoid the transmitter directly settling on the spine. We also do not want it to fall to the front of the animal, or else the animal will be able to claw the transmitter out through its own skin.
  4. The pocket should be just large enough to accommodate the transmitter. A snug pocket will hold the transmitter in place.
  5. Create a tunnel for the leads to pass from the transmitter pocket to the scalp incision.
  6. To prevent irritation in the animals neck, make the tunnel along the back of the animal, up until the neck, and then bring the tunnel around the side of the neck rather than directly over the spine, so that the tunnel arrives at the scalp incision at an angle to the spine.
  7. Place transmitter in the pocket you created under the skin in the back.
  8. Feed electrode leads up the back tunnel and pull through the scalp incision with tweezers.
  9. Make sure the leads are out of the way when drilling through the skull in the next steps

Burr Hole Drilling

  1. Glue the skin of the scalp in place with Vetbond to prevent bleeding and keep skin retracted for surgery.
  2. Zero the stereotaxic stand using the bregma as your reference.
  3. Using your stereotaxic stand, locate the desired burr hole coordinates and mark them on the skull with a sterilized marker.
  4. Drill burr holes at marked positions. Drill down until a thin layer of bone remains to cover the dura. Use a sterile syringe needle or sharp-pointed tweezers to poke through the remaining bone to the dura.
  5. If you are going to anchor bare-wire electrode in these holes, confirm the screws fit in the burr holes.
  6. Dab excess fluid with sterile cotton.

EEG Implantation

  1. If you made an incision in the back for your transmitter, and you are going to deploy a depth electrode for the red EEG lead, prepare and connct the depth electrode to the red lead now, before you inserting the electrode into the brain. See our Electrode Implantation Protocol for detailed descriptions of connection and insertion methods for our various depth electrodes.
  2. Insert surface electrodes into burr-holes first. You may be deploying both the red and blue leads as surface electrodes, in which case, prepare the bare wire end and fasten in place with a screw, as we describe in our separate Electrode Implantation Protocol.
  3. Insert depth electrodes. In this example protocol, we have only one EEG recording channel. Most likely you will chose to put the blue lead over the cerabellum with a surface electrode, and the red lead will receive the depth electrode. Fasten the depth electrode into the stereotaxic clamp and maneuver it into position, as we describe in our separate Electrode Implantation Protocol.
  4. If bleeding occurs, dab with a cotton-tipped applicator.
  5. Apply cyanoacrylate around the burrholes to prepare them for dental cement.
  6. Make sure no cyanoacrylate penetrates the burr hole of a surface electrode, or else the cyanoacrylate might form an insulating layer over the electrode wire.
  7. Move excess leads back into the tunnel over the neck. If you have made a back incision, you can pull them from there. If you are using only the scalp incision, you must push them down the tunnel you made for the transmitter. The length of lead exposed over the scalp should be as short as possible.
  8. Leave slack in the leads under the skin. If the leads are pulled too tight between the trasnmitter and the electrodes, they can irritate the animal, dislodge the electrodes, or drag the transmitter body towards the head.
  9. Secure the leads where they exit the scalp incision with cyanoacrylate.

EMG Implantation

If we are implanting to record EMG, we place the first of two EMG electrodes in one of the trapezius muscles. For EMG recording, we use our soft tissue electrode, which we suture in place and insulate with a cap. In this examle, we begin by placing the one EMG lead in the left trapezius muscle. But we can record biopotentials from any region of the animal using soft tissue electrodes.

Figure: Insertion of EMG Leads Into the Trapezius Muscle.
  1. Extend the existing incision a few millimeters beyond the skull to expose the trapezius muscles on the neck.
  2. Expose both trapezius muscles. You will be implanting one electrode in each.
  3. Identify the top of the two trapezius muscles and locate the midline between them.
  4. There will be two EMG leads. In our diagram they are green and purple. You will implant each in a separate trapezius muscle.
  5. Insert the needle on the side of the neck opposite the natural location of the electrode lead.
  6. The needle should create both an entrance into and an exit from the muscle.
  7. The tunnel should be roughly 2 mm long and penetrate 1 mm into the tissue at its deepest point.
  8. Control bleeding with sterile cotton and leave the needle in place.
  9. With the needle still in the muscle, insert the P-Coil at the end of the purple EMG lead into the needle tip.
Figure: Securing the EMG leads to the Trapezius Muscle. We record EMG with a soft tissue electrode.
  1. Remove the needle while holding the wire in position with tweezers.
  2. Once you have removed the needle, you should see 1 mm of bare steel coil protruding from the muscle on the far side of the tunnel.
  3. Keep the wire in position. Secure the lead in place with a single suture near the entry point.
  4. The suture must wrap around the insulation of the lead, not the bare steel coil at the end of the lead.
  5. Try to leave no bare steel coil exposed at the entry point.
  6. Cut a 10-mm length of catheter tube and inject silicone sealant into one end.
  7. Slide the sealed end of the catheter tube over the exposed coil at the exit of the tunnel.
  8. Wait until the silicone sealant cures. Now the catheter is fastened to the coil.
  9. Cut the catheter close to the P-Coil, creating a compact and secure "wire cap".
  10. The wire cap insulates the exposed electrode wire, reducing the amplitude of noise and artifacts in the EMG signal.

Now that you have the first EMG electrode placed and imlanted, repeat the placement and securing procedures for the second EMG electrode in the right-side trapezius muscle.

Cementing and Closing

There are two schools of thought when it comes to closing the scalp incision. One is to suture the scalp over the electrodes we have implanted on the skull. The other is to glue the edges of the incision to the skull with cyanoacrylate and fill the opening in the scalp with dental cement. Here we describe the most widely-used of these procedures, the one that works just as well with depth and surface electrodes: the construction of a dental cement dome. If you are deploying only surface electrodes, however, you can consider keeping the thickness of your insulating dental cement to a minimum and suturing the scalp. Once the scalp incision heals, the result is long-lasting and more natural to look upon.

  1. If you have implanted EMG electrodes, close the incision over the trapezius muscles and suture the skin all the way up to the base of the skull, but no farther.
  2. Secure burr holes and depth electrodes in place with a dental cement and allow to cure.
  3. Clip protruding depth electrode posts at designed breakpoints.
  4. Cover over all exposed areas, all exposed metal, and all leads with more cement.

  5. Minimize the amount of contact between the dental cement and the animal's fur and skin.
  6. The top of the dental cement may remain a bit tacky. Cover it with more dental cement.
  7. Allow cement to cure and trim excess with a scalpel or scissors.
  8. Seal the cement-skin interface with cyanoacrylate.
  9. Do not allow cyanoacrylate to touch the animals eyes, nor to flow onto its fur.

If you used the single-incision method, you are are now closed up and done with surgery. If you used the two-incision method, you still have the back incision to close.

  1. Close the back incision with sutures.
  2. The SCT leads may be coiled near the transmitter body, so take care not to caught and bind them with your sutures.
  3. The transmitter should be sitting in a pocket to one side of the incision, not directly beneath the sutures.

Post-Surgical Care

Notes and Best Practices